XYN11B_COCSA
  Name and origin · Biochemical properties · Enzyme annotation · Literature · Protein features · Sequences · Cross-refs · Entry history
Name and origin
Show Hide | Top
Gene Name
Name: xyn11B
Other given name: XYL2
Protein names
Common name: Xylanase
EC systematic name: 4-beta-D-xylan xylanohydrolase
Other name: endo-(1-4)beta-xylan 4-xylanohydrolase; endo-1,4-xylanase; beta-1,4-xylanase; endo-beta-1,4-xylanase; endo-1,4-beta-D-xylanase; 1,4-beta-xylan xylanohydrolase; beta-D-xylanase; 4-beta-D-xylan xylanohydrolase
Organism
Species: Cochliobolus sativus
Strain: SB5
Taxonomic identifier: 45130
Taxonomic lineage: Eukaryota › Fungi › Dikarya › Ascomycota › Pezizomycotina › Dothideomycetes › Pleosporomycetidae › Pleosporales › Pleosporineae › Pleosporaceae › Cochliobolus
Enzyme activity Catalyzes the endo-hydrolysis of beta-1,4-xylosidic linkages in xylans
Biochemical properties
Show Hide | Top
General properties
Expression host
Substrate
Assay
Temperature Optimum(°C)
Temperature Stability(°C)
pH Optimum
pH Stability
Kinetic properties
Host Substrate Activity assay conditions Specific activity Relative activity(%) Assay Reference
Activity assay
Escherichia coli SOLR oat-spelt xylan phosphate-citrate buffer, pH 6.4, 37°C. active Dinitrosalicylic acid method.
 
Host Substrate Activity assay conditions Product formed Product analysis Reference
Product analysis
 
Host Substrate Kinetic assay conditions Km Kcat(s-1) Vmax Reference
Kinetic assay
 
Other features
Enzyme annotation
Show Hide | Top
Enzyme
   Enzyme commission
3.2.1.8; 4-beta-D-xylan xylanohydrolase
Gene Ontology
GO ID Term Evidence Reference
   Biological process
GO:0045493 xylan catabolic process IDA
   Molecular function
GO:0031176 endo-1,4-beta-xylanase activity IDA
   Cellular component
GO:0005576 extracellular region IDA
Literature
Show Hide | Top
Protein features
Show Hide | Top
Signal Peptide (Predicted) SP(19aa)
N-Terminal (Experimental)
Structure PMID Reference
Sequence PMID Reference
CBM
Glycosylation
Other Domains
Domain Order
CAZy family GH11
Sequences
Show Hide | Top
Length 231aa
Molecular Weight in kDa (experimental)
Molecular Weight in kDa (predicted) 23.67
Protein Sequence O13447
MVSFKSLLLA AVATTSVLAA PFDFLRERDD GNATALLEKR QSTPSSEGYH NGYFYSWWTD GGGSAQYTMG EGSRYSVTWR NTGNFVGGKG WNPGTGRVIN YGGAFNPQGN GYLAVYGWTR NPLVEYYVIE SYGTYNPSSG AQVKGSFQTD GGTYNVAVST RYNQPSIDGT RTFQQYWSVR QQKRVGGSVN MQNHFNAWSR YGLNLGQHYY QIVATEGYQS SGSSDIYVQT Q
DNA Sequence AJ004802
ATATTTTGGG CAGGACCGTG TTCCAACCGG TGGTTAACTG AAAGATTGCC CGAGATTTCC CGCCTAGAGC CTTCTGTGTC CTGTTCACGT GTGATACTAC CCCTGATCGA TTCCTCGTCT ATGCATGTTT TAGCCCCGAT TGAAGTCCCT TCTTGGGCTG TGAAAGCATA TGGGGAGTGT GGGGTAGGGT GTCTGCACTT ATTTCTGTGG CGTTCCCTTT ATATTAACGT CCTCGAAACC CGGTTCAAAC AGCGCGTAAA CCCGGGTAGA GCGATGTTCT GTTAATTATG TTATGCAGAT TTACGCAGGG CTACGGATCT TTTTGATCAC CCCGTGGTGG CTGTTGCTAC CGAAACTGGA TGCCGATCGG TGCATGTTCC CTATGTGTCT CGACTTGGTC ATTGTGGCCG CCGCTTAGGG CGAGGTTGTC GAAGTGAGAG GCTCTAACCT ACCACCAATG TGTACACCAT CACGAATAGA GACAACACGT GAGACGAGAC CTCATGACCC CCCAGTATCA TTTCATCCTG CGATTCAGGC TCAACTATTA CTCGGCGTAG AGATATAAGT TGATAGCTGC TCCCAGTCAG TAGCATCACT GCATCCAACA CAGATCAGCA ACACTCAACA CAAGATGGTT TCCTTCAAGT CTCTGCTTCT CGCCGCTGTG GCTACCACCA GTGTCCTCGC TGCTCCCTTC GACTTCCTTC GTGAGCGCGA CGATGGCAAC GCGACTGCTC TCCTTGAGAA GCGTCAGTCT ACTCCCAGCT CTGAGGGATA CCACAACGGA TACTTCTACT CGTGGTGGAC TGATGGCGGC GGCTCTGCCC AGTACACCAT GGGTGAGGGC AGCAGGTACT CCGTGACCTG GAGGAACACT GGCAACTTTG TTGGTGGCAA GGGATGGAAC CCTGGAACCG GCCGGTAGGT TGCGAAGACT GGTTGCTGAT TAGAATTTTA CTAATGTGAC TTCGTAGTGT CATCAACTAC GGCGGAGCCT TCAACCCCCA GGGCAACGGA TACCTCGCTG TGTACGGATG GACCCGCAAC CCGCTTGTCG AGTACTACGT AATTGAATCC TACGGAACCT ACAACCCCAG CAGTGGAGCC CAGGTCAAGG GAAGCTTCCA GACTGACGGT GGTACTTACA ACGTTGCCGT CTCCACCCGT TACAACCAGC CCTCCATTGA CGGAACAAGG ACCTTTCAGC AGTATTGGTA AGTCATTTTG GTGTTTGATT CAACAGAAGC GTAGATTCTG ACTATTGTGA TAGGTCTGTC CGCCAACAGA AGCGTGTCGG TGGAAGCGTG AACATGCAGA ACCACTTCAA CGCTTGGTCT CGCTATGGCT TGAACCTTGG TCAACACTAC TACCAGATCG TCGCCACTGA GGGTTACCAG TCTTCCGGAA GCTCTGACAT CTACGTGCAG ACTCAGTAGA GGAGTTGTTG TCTGTGGAGC GAGCAACTAG CAGACGAGAT CAGACAAGAA TAGTGCCTCG GATAGTTGTG AGCAAATTGG AGAAAGAGCG ATGCGTTCGA GTTACTGTAC CTAGAAACAT GTCAATTCAC TCGCTATAAA ATATTCCGTT CTCGAATTTG TTCTTTTTTT TTTGGAGTAT TTGAGCATGG TATCATGCTG CAGCAAAAGC AGCTAGAATC TAAGTGAGGT AGAAAACGAA AATCATGAAG TAGCTAGCAT GATGATGGCG CAATAGCACT TTGCCCCAGT AGGCGCACTA ATGTGTTGAT TTCACAGGGG TGCCTTGACG ATCGTTTTGT GTATAGCTGA CTCATGGAGA CTTGTATTGC AGACCGTCTT AGTCCAGTAG CCATAGAATG CTGGTATGAG TTCGACGTAG CTAACACATG TGTGCTGACT GAGCGGTTTT CTCCTCTCAT CTACTAACCA GCAACAGCAT ACTACTCTTG TTTGGCAACT TTACATTTTG TTAAAGACAT TCGTTCCAGT CATATATTGT TCCGTGCCCT CTCTCATCCT GCCTTCAGTC TCCATGTTAT AACTGTCCTC GGTGACATGA ACTCATCAGT TAGTCCTTCC AATAATACGC TATTTTGGCG CCTCCAGCCT CGGCCATGAG GTCGAAGCAT TCGCCAGACT CACTGCCTGG CCTTTTCCAA AACGGCCAAG ACCACCATCG AACCAACGTG CCTGCTCCCT TCGAACTTCC CTAAAGCCGG AATTCCCAGC A
Cross-references
Show Hide | Top
GenBank AJ004802
UniProt O13447
Protein CAA06151
RefSeq Protein
Broad
PDB
Entry history
Show Hide | Top
Entry Name XYN11B_COCSA
Previous Entry Names
Last Modification Date 2014-01-29